Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015918220.1_cds_XP_016467714.1_60433
CDS Infomation

[gene=LOC107790311] [db_xref=GeneID:107790311] [protein=rhamnogalacturonate lyase-like isoform X2] [protein_id=XP_016467714.1] [location=join(12659..12700,13292..13413,14556..14612,14700..14819,14925..15050,15291..15432,15767..15937,16068..16223,16307..16413,16502..16592,16921..17062,17150..17306,17486..17602,18155..18281,18394..18630)] [gbkey=CDS]
Sequence

ATGTCCCCAATTGGAGTGAAGTTGTACATTCAGGATCGTCATGTGATGATGGATAATGGC
ATAGTCCAAGTCACGTTATCAAATCCGGACGGAATTGTCACTGGAATACGCTATAATGGC
GTAGATAATCTACTTGAAGTCCTTAATGATGAATCCAATAGAGGGTACTGGGACGTTGTC
TGGAATTCTCTAGATGGTGGAAGAAGTGGAGTATTTGAAGTGATCAAGGGTACAAATTTT
GAGGTTATAACAGAGACAGACAATCAGGTTGAGATATCATTTTCCCGACCATGGGATCCC
TCCCTCCAAGGCAAACTTGTTCCGCTGAATATTGACAAAAGGTTTATTTTGCTCCGTGGC
TACTCTGGTTTCTACTCCTATGCCATTTATGAGCATGTTGGTTCACCTGAGTGGCCTGCC
TTCAGCCTTGGTGAAACTAGAATAGCATTCAAGCTCCGGAAAGATAAGTTTCACTACATG
GCTGTTGCAGACAATAGGCAAAGATTCATGCCTCTACCAGATGACCGATTGCCTGCAAGA
TGCCAACGCCTTGCCTATGCAGAAGCAGTCCTACTTAATAATCCCGTGGAGCCTGAGTTA
AGAGGAGAGGTCGATGACAAATACCAGTACTCATGTGATAATAAAGATAACAAGGTTCAC
GGCTGGATATCTATGGATCCACCTGTGGGATTCTGGCAAATTACTCCGAGCGATGAATTT
CGATCTGGTGGTCCTGTCAAACAGAACCTCACATCCCATGTCGGTCCAACTACCCTAGCT
ATGTTTCTAAGCTCTCATTACGCTGGGGATGATCTAACACCAAAATTTGCTCAAGGAGAA
GCCTGGAAGAAAGTTTTTGGCCCCGTTTTTATATATGTTAATTCTGTTATGCAAGGGGAA
GATCCTGTTGCTCTATGGGATGATGCCAAGATACAGATGCAGGTTGAAGTTCAAAGCTGG
CCTTACTGTTTTCCAGCATCAGAAGATTTTCCATCAGCAGATCAAAGGGGCAATGTTAGT
GGTAGACTTTTGGTTCAAGACGAGTACATTAGTGATGATTATATACCAGCAAATGGCGCT
TATGTTGGGCTTGCTCCACCAGGAGAAGCTGGTTCCTGGCAAAAAGAATGCAAGGACTAT
CAATTTTGGGCTAAAGCGGACAGTATTGGATACTTCTCCATAAACAATATACGTCCTGGG
GACTACAATCTTTATGCATGGGTCCCTGGATTCATTGGGGACTATTTATATGAGACTCCC
ATTTCCATAACTCCAGGTTGTAGTGTTGATGTGGACGAAATCGTATATCAGCCTCCTAGG
GATGGCCCCACATTATGGGAAATAGGCATTCCTGATCGTACGGCTGCAGAATATTTTGTC
CCTGAACCCAACCCAAGATTTATCAACAAGCTTTTCATCAATCATCCCGATAGATTCAGG
CAATATGGATTGTGGGAAAGATACTCCGAGCTATATCCAAAAGATGACCTTGTGTATGTA
ACTGGAGAAAGTGACTATAGTAAAGACTGGTTTTTTGCTCAGGTTCCAAGGAGAAAAGAG
GACGGTACATATCAAGGAACCACGTGGCAAATCAGATTTAAACTTGATTCGGTCAATCAA
GTAGGAACTTATAAATTGCGCATTGCAATTGCATCTGCAACTTTAGCTGAAGTGCAGGTT
CGAGTGAATGATCCGAACACAAACCGGCCTCTATTTTCGACGGGATTGATTGGAAGAGAT
AACTCAATTGCTAGGCATGGAATTCATGGCCTCTATTGGTTGTACAATATAGACATACAG
GGAAATCTGCTAGTGCAGGGAGATAACACTATTTACTTAGGCCAACCAAGAAACCAAAGT
CCTTTCCAGGGGATTATGTATGACTATATTCGTCTTGAAGCGCCACCAAACTAA

Peptide Sequence

PEP ID

XP_016467714.1
PEP Infomation

PREDICTED: rhamnogalacturonate lyase-like isoform X2 [Nicotiana tabacum]
Sequence

MSPIGVKLYIQDRHVMMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDVV
WNSLDGGRSGVFEVIKGTNFEVITETDNQVEISFSRPWDPSLQGKLVPLNIDKRFILLRG
YSGFYSYAIYEHVGSPEWPAFSLGETRIAFKLRKDKFHYMAVADNRQRFMPLPDDRLPAR
CQRLAYAEAVLLNNPVEPELRGEVDDKYQYSCDNKDNKVHGWISMDPPVGFWQITPSDEF
RSGGPVKQNLTSHVGPTTLAMFLSSHYAGDDLTPKFAQGEAWKKVFGPVFIYVNSVMQGE
DPVALWDDAKIQMQVEVQSWPYCFPASEDFPSADQRGNVSGRLLVQDEYISDDYIPANGA
YVGLAPPGEAGSWQKECKDYQFWAKADSIGYFSINNIRPGDYNLYAWVPGFIGDYLYETP
ISITPGCSVDVDEIVYQPPRDGPTLWEIGIPDRTAAEYFVPEPNPRFINKLFINHPDRFR
QYGLWERYSELYPKDDLVYVTGESDYSKDWFFAQVPRRKEDGTYQGTTWQIRFKLDSVNQ
VGTYKLRIAIASATLAEVQVRVNDPNTNRPLFSTGLIGRDNSIARHGIHGLYWLYNIDIQ
GNLLVQGDNTIYLGQPRNQSPFQGIMYDYIRLEAPPN

Transcript Sequence

Gene sequence data has not been registered.